Calculte TIN (transcript integrity number) from RNA-seq reads
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam:file
Input BAM file
*.{bam}
bai:file
Index for input BAM file
*.{bai}
bed:file
BED file containing the reference gene model
*.{bed}
txt
meta:file
TXT file containing tin.py results summary
*.txt
*.txt:file
xls
XLS file containing tin.py results
*.xls
*.xls:file
versions
versions.yml:file
File containing software versions
versions.yml
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
